Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
process VCF workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416 |
||
Varscan Workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c |
||
FASTQ to BQSR
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
||
Merge, annotate, and generate a TSV for SVs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416 |
||
assm_assm_blastn_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad |
||
scatter-valuefrom-wf1.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf1.cwl Branch/Commit ID: 4df56e95e6fceab69e677b539f3532cbf5946197 |
||
Unaligned BAM to BQSR and VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 700e73aaed6db1ad538dd27b2e1709f436ad3edb |
||
heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/datirium/workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: 4360fb2e778ecee42e5f78f83b78c65ab3a2b1df |
||
scatter-wf3.cwl#main
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/scatter-wf3.cwl Branch/Commit ID: e67f19d8a713759d761ecad050966d1eb043b85c Packed ID: main |
||
Whole genome alignment and somatic variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec |