Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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stage_data_workflow.vcf_to_aliquot_maf.cwl
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https://github.com/NCI-GDC/aliquot-maf-cwl.git
Path: vcf-to-aliquot-maf/subworkflows/stage_data_workflow.vcf_to_aliquot_maf.cwl Branch/Commit ID: main |
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rRNA annotation workflow with scatter processing
\"This workflow performs rRNA annotation processing for multiple index files using scatter. It executes 4 processes: makeblastdb, blastn alignment, filtering, and rRNA removal for each rRNA index file. related CWL file: ./Tools/09_makeblastdb_rRNA.cwl ./Tools/10_blastn_rRNA_alignment.cwl ./Tools/10_blastn_rRNA_filter1.cwl ./Tools/10_blastn_rRNA_filter2.cwl ./Tools/10_blastn_rRNA_filter3.cwl\" |
https://github.com/RyoMameda/workflow_cwl.git
Path: Workflow/blastn_rRNA_ssw.cwl Branch/Commit ID: main |
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maw.cwl
multiple mzml files, all with the same condition |
https://github.com/zmahnoor14/MAW.git
Path: cwl/maw.cwl Branch/Commit ID: main |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 708fd97 |
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sequence (bam or fastqs) to trimmed fastqs and HISAT alignments
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: low-vaf |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: steps/ometiff_second_stitching.cwl Branch/Commit ID: 16794b6 |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 6591870 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: caea457 |
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kmer_build_tree
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023 |
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msi.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/subworkflows/msi.cwl Branch/Commit ID: master |
