Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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kf-cram2gvcf_calc_contam.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: workflows/kf-cram2gvcf_calc_contam.cwl Branch/Commit ID: a25fbec152d701623a7a8fa494b1179cc3c39c38 |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0 |
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bam_readcount workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b |
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seq_cache_workflow.cwl
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https://github.com/wtsi-hgi/arvados-pipelines.git
Path: cwl/workflows/seq_cache_workflow.cwl Branch/Commit ID: 853dd7b285f842faa9f7e4570443cdb7aa3ca993 |
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1st-workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/1st-workflow.cwl Branch/Commit ID: 4df56e95e6fceab69e677b539f3532cbf5946197 |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 1b9094d70f620bb2e51072dd2150150aa4927439 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 74647cc0f1abac4ee22950cfa89c44cf2ca3cffd |
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align_sort_sa
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 041a234a935c7af7d3db95353ef80c61c88fc010 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0 |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 1b9094d70f620bb2e51072dd2150150aa4927439 |