Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
bacterial_kmer
|
https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 3897218b16b30a933beecd60a98a300d677207d8 |
|
|
|
HS Metrics workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec |
|
|
|
varscan somatic workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec |
|
|
|
Detect Docm variants
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec |
|
|
|
bam to trimmed fastqs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd |
|
|
|
Raw sequence data to BQSR
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a |
|
|
|
kfdrc_alignment_pipeline.cwl
|
https://github.com/kids-first/kf-alignment-workflow.git
Path: dev/pilot-run/worklflows/kfdrc_alignment_pipeline.cwl Branch/Commit ID: 0ce16a1ff9219b02b075800ec4f08be1cb60482e |
|
|
|
Merge, annotate, and generate a TSV for SVs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a |
|
|
|
bgzip and index VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
|
|
|
ani_top_n
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 3897218b16b30a933beecd60a98a300d677207d8 |
