Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Per-chromosome pindel	https://github.com/genome/cancer-genomics-workflow.git Path: pindel/pindel_cat.cwl Branch/Commit ID: 8f21f80a504c7fb834af331715a0661707d25537
	count-lines1-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: 9a8e654a91ea5d26e8452dd1cecf3faf22b7a12e
	extract_readgroup_fastq_se_http.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_readgroup_fastq_se_http.cwl Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb
	wgs alignment and germline variant detection	https://github.com/genome/cancer-genomics-workflow.git Path: wgs_workflow.cwl Branch/Commit ID: 6eb7d35ad46207f4ff49e84106b717e17331eb4b
	ROH_workflow.cwl	https://github.com/wtsi-hgi/arvados-pipelines.git Path: cwl/workflows/analysis-workflows/ROH_workflow.cwl Branch/Commit ID: 8c9284622ea52a2f0bf24533b46ead59d35a32e9
	etl.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/etl.cwl Branch/Commit ID: ff015418f870bdfbd82ba675eb549fe8b4584b0c
	transform.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/dnaseq/transform.cwl Branch/Commit ID: d5757ab1f3aad3c542950e1dbe8f9d2eec74bede
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/cancer-genomics-workflow.git Path: rnaseq/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 8f21f80a504c7fb834af331715a0661707d25537
	bwa_se.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/bwa_se.cwl Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb
	EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.	https://github.com/farahzkhan/ebi-metagenomics-cwl.git Path: workflows/emg-qc-single.cwl Branch/Commit ID: 6430df56f7345f837d3f9c3f7fb5af5aa9dadc90