Explore Workflows

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines11-null-step-wf.cwl

Branch/Commit ID: main

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/bwa_index.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/step-valuefrom-wf.cwl

Branch/Commit ID: 75271e2a0887d47cca4077b60dd51ac763c09b63

ATAC-seq pipeline - reads: PE - with blacklist removal

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl

Branch/Commit ID: master

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/bisulfite.cwl

Branch/Commit ID: No_filters_detect_variants

get KGML by multiple ids

https://github.com/manabuishii/wgetkegg.git

Path: wgetkegg_ids.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom5-wf.cwl

Branch/Commit ID: main

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: 1.0.0

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: No_filters_detect_variants

https://github.com/nci-gdc/htseq-cwl.git

Path: workflows/subworkflows/htseq_workflow.cwl

Branch/Commit ID: master