Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open reference otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/OPENrefcluster2plot.cwl Branch/Commit ID: master |
|
|
|
chksum_seqval_wf_interleaved_fq.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.3.0 |
|
|
|
sc_atac_seq_prep_process_init.cwl
|
https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/sc_atac_seq_prep_process_init.cwl Branch/Commit ID: 3da5dd0 |
|
|
|
scRNA-seq pipeline using Salmon and Alevin
|
https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 163fd2d |
|
|
|
tRNA_selection.cwl
|
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 135976d |
|
|
|
Quality assessment, amplicon classification
Workflow for quality assessment of paired reads and classification using NGTax 2.0. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Export module |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_ngtax.cwl Branch/Commit ID: master |
|
|
|
germline-gpu-v4.0.1.cwl
|
https://github.com/NCGM-genome/WGSpipeline.git
Path: Workflows/germline-gpu-v4.0.1.cwl Branch/Commit ID: main |
|
|
|
Compute average of average for core domain instances
Compute average structure for all averaged structures corresponding to core UniProt domain instances. First computes average per UniProt domain instance and then average all averaged structures. |
https://github.com/HrishiDhondge/CroMaSt.git
Path: Tools/core_avg_subwf.cwl Branch/Commit ID: main |
|
|
|
io-int-wf.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/io-int-wf.cwl Branch/Commit ID: master |
|
|
|
bams2gvcf.woBQSR_male.multisamples.cwl
|
https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_male.multisamples.cwl Branch/Commit ID: master |
