Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Apply filters to VCF file
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![]() Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f |
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Hello World
Outputs a message using echo |
![]() Path: tests/wf/hello-workflow.cwl Branch/Commit ID: 1eb6bfe3c77aebaf69453a669d21ae7a5a78056f |
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taxonomy_check_16S
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![]() Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f |
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bam to trimmed fastqs and biscuit alignments
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![]() Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
![]() Path: minibam_sub_wf.cwl Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4 |
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gathered exome alignment and somatic variant detection for cle purpose
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![]() Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c |
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Apply filters to VCF file
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![]() Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470 |
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format_rrnas_from_seq_entry
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![]() Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 1e7aa9f0c34987ddafa35f9b1d2c77d99fafbdab |
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tt_kmer_compare_wnode
Pairwise comparison |
![]() Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: 92118627c800e4addb7e29b9dabcca073a5bae71 |
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main-somatic.cwl
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![]() Path: somatic/somatic-workflow/main-somatic.cwl Branch/Commit ID: 7c46d5c6ef6501dc0e07a9b740e9de64ffec83f5 |