Explore Workflows
View already parsed workflows here or click here to add your own
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
![]() Path: zip_and_index_vcf.cwl Branch/Commit ID: c752ff9f6ad67aa302d793867ba0ea33b85e6bd3 |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
![]() Path: preprocess_vcf.cwl Branch/Commit ID: c752ff9f6ad67aa302d793867ba0ea33b85e6bd3 |
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extract_readgroup_fastq_pe.cwl
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![]() Path: workflows/bamfastq_align/extract_readgroup_fastq_pe.cwl Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0 |
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preprocess.cwl
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![]() Path: cwl/preprocess.cwl Branch/Commit ID: 84cc7c986b15a4f46f67a6b4a2b2b8a7faa31bdb |
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SSU-from-tablehits.cwl
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![]() Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 85155424fa5654526517369be2fa479a7d4d90de |
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status_postgres.cwl
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![]() Path: workflows/fastq_readgroup_stats/status_postgres.cwl Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0 |
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scatter-valuefrom-wf2.cwl
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![]() Path: v1.0/v1.0/scatter-valuefrom-wf2.cwl Branch/Commit ID: 4fe434e969c93c94b690ba72db295d9d52a6f576 |
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5S-from-tablehits.cwl
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![]() Path: tools/5S-from-tablehits.cwl Branch/Commit ID: cff6ca51706f18b1c7052d801d05414f489cec58 |
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flagging.cwl
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![]() Path: cwl/workflows/flagging.cwl Branch/Commit ID: 485e26165243201bdff355b28ff7ae2625af83e5 |
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status_postgres.cwl
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![]() Path: workflows/fastq_readgroup_stats/status_postgres.cwl Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0 |