Explore Workflows

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/runner.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/etl.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/fastqtosam/fastqtosam_se.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines5-wf.cwl

Branch/Commit ID: e0cc5bd1c2fc4625f2cb5a819d3c1939aa8460db

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/transform.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: oxog_sub_wf.cwl

Branch/Commit ID: 88c5eef2f5ee5c1e878b0476f6e1f74cecf9ec29

https://github.com/ncbi-gpipe/pgap.git

Path: progs/protein_extract.cwl

Branch/Commit ID: df5e285d48cbdf2e296d530a3067d41b1905e13a

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 1cfe5c41d640b85866f484933b8f9bb4c175796f

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines6-wf.cwl

Branch/Commit ID: e0cc5bd1c2fc4625f2cb5a819d3c1939aa8460db

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_capture_kit.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0