Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph oxog_varbam_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: c162a19d83f872fe0dc0077e18bef22c99423e4d
workflow graph bam-genomecov-bigwig.cwl

creates genome coverage bigWig file from .bam file

 https://github.com/Barski-lab/ga4gh_challenge.git

Path: workflows/bam-genomecov-bigwig.cwl

Branch/Commit ID: b1c723fe94cda2d19efc7f792970a31413640d59
workflow graph strelka workflow

https://github.com/genome/arvados_trial.git

Path: strelka/workflow.cwl

Branch/Commit ID: 202b43b7449485a317c857d62ca7d39196764e65
workflow graph dummy.cwl

https://github.com/NCBI-Hackathons/Epigenomics_CWL.git

Path: cwl/workflows/dummy.cwl

Branch/Commit ID: 934baaadf133eda785426079d98489307d02f3d7
workflow graph kmer_gc_extract_wnode

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_kmer_gc_extract_wnode.cwl

Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 823cdf7a6601a3799f6167f3566ae02590748f6b
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: eeb3d70a9ff7fd386ca4e50f7dbbe2fecb81c907
workflow graph kmer_build_tree

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_kmer_build_tree.cwl

Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: e1b0fceb0efce1b787b5782408cdf6f163b8ff56
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: cff6ca51706f18b1c7052d801d05414f489cec58