Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bgzip and index VCF	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8
	wgs alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: 74647cc0f1abac4ee22950cfa89c44cf2ca3cffd
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 1b9094d70f620bb2e51072dd2150150aa4927439
	scatter GATK HaplotypeCaller over intervals	https://github.com/litd/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 193b8de694f262ad55c7635a603c20c124748583
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d
	Replace legacy AML Trio Assay	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/cle_aml_trio.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f
	04-quantification-pe-unstranded.cwl RNA-seq 04 quantification	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/RNA-seq_pipeline/04-quantification-pe-unstranded.cwl Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854
	transform.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/transform.cwl Branch/Commit ID: 1326fb7fedca91a274fb7596c9052a4d279eacf9
	umi per-lane alignment subworkflow	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8