Explore Workflows

Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-08-taxonomic-analysis.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: dev

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: low-vaf

Final filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/final_filtering.cwl

Branch/Commit ID: 1.1.3

Some workflow engines won't stage files in our nested structure, so parse it out here

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: master

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: main

Packed ID: VDJ_Assemble_and_Annotate_Contigs_TCR.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: c211071

https://github.com/betisb/InputParser.git

Path: cwl/blast-scatter-flow-needs-work.cwl

Branch/Commit ID: master

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: low-vaf

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: 5833078