Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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scatter-valuefrom-wf1.cwl
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![]() Path: v1.0/v1.0/scatter-valuefrom-wf1.cwl Branch/Commit ID: f02557902989c749c9c2187c7045e340e2d76bfc |
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fastqc-0-11-4-1.cwl
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![]() Path: cwl_awsem_v1/fastqc-0-11-4-1.cwl Branch/Commit ID: 895a101d06c26f8c7f8a63545b2b74921b5f7526 |
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varscan somatic workflow
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![]() Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a |
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transform_pack.cwl#conditional_bamindex.cwl
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![]() Path: workflows/bamfastq_align/transform_pack.cwl Branch/Commit ID: a57b8f0d8708078e87f13297e065d72db10e38a0 Packed ID: conditional_bamindex.cwl |
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io-int-default-tool-and-wf.cwl
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![]() Path: v1.0/v1.0/io-int-default-tool-and-wf.cwl Branch/Commit ID: 4d06b9efd26c5813c13684ebcc95547bb75ddfcc |
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count-lines1-wf.cwl
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![]() Path: tests/count-lines1-wf.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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![]() Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f |
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Bisulfite QC tools
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![]() Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
![]() Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c |
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bam_readcount workflow
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![]() Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 9e5f228bc1a3d0dfe950b5d41d7e4319e834a6d4 |