Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment and somatic variant detection	https://github.com/genome/cancer-genomics-workflow.git Path: somatic_exome_workflow.cwl Branch/Commit ID: bc4a0f74082ffcf099977a1efac830d7e100bd66
	mixed_library_metrics.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/mirnaseq/mixed_library_metrics.cwl Branch/Commit ID: ff015418f870bdfbd82ba675eb549fe8b4584b0c
	preprocess fastq Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 49e29dfc5b1f7a7630831a1052f9136caa29dbf7
	extract_capture_kit.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_capture_kit.cwl Branch/Commit ID: a57b8f0d8708078e87f13297e065d72db10e38a0
	integrity.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/integrity.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c
	metrics.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/dnaseq/metrics.cwl Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb
	exome alignment with qc	https://github.com/genome/cancer-genomics-workflow.git Path: exome_alignment.cwl Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a
	stats.cwl	https://github.com/EBI-Metagenomics/CWL-assembly.git Path: cwl/stats/stats.cwl Branch/Commit ID: 0ce32c67ded8d249329c8d5a6fda2471aee9b5c3
	Per-chromosome pindel	https://github.com/genome/cancer-genomics-workflow.git Path: pindel/pindel_cat.cwl Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31
	count-lines5-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: e4a52682f3bdefafe5c27e32983fed31116ac489