Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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TAP 0.9
todo |
https://github.com/MG-RAST/amplicon.git
Path: CWL/Workflows/relabel-and-merge.cwl Branch/Commit ID: d86dea59873aecc378c5cff64f93cd72b46b59bd |
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kfdrc_bwamem_subwf.cwl
|
https://github.com/kids-first/kf-alignment-workflow.git
Path: workflows/kfdrc_bwamem_subwf.cwl Branch/Commit ID: edd5a6b2df3b4d0503e09fb17f5f1ef278594af3 |
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wf-alignment.cwl
|
https://github.com/bcbio/bcbio_validation_workflows.git
Path: NA24385-sv/NA24385-sv-workflow/wf-alignment.cwl Branch/Commit ID: c4592973b1580e3ff44cb697f64b12345b91e6f5 |
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Detect DoCM variants
|
https://github.com/genome/cancer-genomics-workflow.git
Path: docm/germline_workflow.cwl Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31 |
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QIIME2 Step 2 (DADA2 option)
QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb Packed ID: main |
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Varscan Workflow
|
https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/germline_workflow.cwl Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31 |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 708fd971bd3abe4d367e501583b964bc4c0311b9 |
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readgroup_fastq_se.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/readgroup_fastq_se.cwl Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb |
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01-qc-se.cwl
RNA-seq 01 QC - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065 |
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02-trim-se.cwl
RNA-seq 02 trimming - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065 |