Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph transform.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/transform.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0
workflow graph kallisto.cwl

https://github.com/KevinSayers/kallisto-nf.git

Path: kallisto.cwl

Branch/Commit ID: 4c5f1540109c8596b53e9f460cd5f8e57b65db37
workflow graph Run genomic CMsearch (5S rRNA)

https://github.com/ncbi-gpipe/pgap.git

Path: bacterial_noncoding/wf_gcmsearch.cwl

Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: ca6ca613f0d3728d9589a6ca6293e66dfde87bfb
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 958b2a392ab2513aa0fbfab558dbf844b549669d
workflow graph main.cwl

https://github.com/smc-rna-challenge/zhanghj-9609594.git

Path: main.cwl

Branch/Commit ID: 9495f778ed203c82c554144f9ae2dc7e3b66378b
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 0fa87c018a21d55cdea6e89be1feec1913144009
workflow graph readgroups_bam_to_readgroups_fastq_lists.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroups_bam_to_readgroups_fastq_lists.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0
workflow graph rnaseq.cwl

https://github.com/IFB-ElixirFr/ReproHackathon.git

Path: reprohackathon1/cwl/tools/rnaseq.cwl

Branch/Commit ID: 94ec2488b995f995ca9d5d093219519254bbcc65
workflow graph cmsearch-multimodel.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 47d6375df6c6e4486e03d964b3abf1d71943e609