Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 930a2cf6fff820c2461b42dd79d71d9379343013 |
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LSU-from-tablehits.cwl
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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cmsearch-multimodel.cwl
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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Unaligned to aligned BAM
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https://github.com/genome/cancer-genomics-workflow.git
Path: unaligned_bam_to_bqsr/align.cwl Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a |
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functional analysis prediction with InterProScan
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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process VCF workflow
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: strelka/process_vcf.cwl Branch/Commit ID: 8c5ae3dbabfe73e0a577b91b25ef5b0b32f388cb |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc Packed ID: qiime2-08-taxonomic-analysis.cwl |
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qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc Packed ID: qiime2-05-phylogeny.cwl |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc Packed ID: qiime2-04-features.cwl |