Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: preprocess_vcf.cwl Branch/Commit ID: b38a8a4785746b8267913ea5389e21ae6dc921a3 |
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sac-preprocess.cwl#main
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/sac-preprocess.cwl Branch/Commit ID: bfd504ae910fbf7a3492f53430a1c9f3c3c97470 Packed ID: main |
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wf-variantcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: somatic-giab-mix/somatic-giab-mix-workflow/wf-variantcall.cwl Branch/Commit ID: c4592973b1580e3ff44cb697f64b12345b91e6f5 |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3b602cb35bf68b9a3b2e16fe9ac4c3e2a9d8fdae |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi-gpipe/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: bf7e02ee89d1bb18462cefdbe0db41b09fe75236 |
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integrity.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: d5757ab1f3aad3c542950e1dbe8f9d2eec74bede |
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kb-tss-preprocess-all.cwl#kb-tss-preprocess-single-dir.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/kb-tss-preprocess-all.cwl Branch/Commit ID: bfd504ae910fbf7a3492f53430a1c9f3c3c97470 Packed ID: kb-tss-preprocess-single-dir.cwl |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: minibam_sub_wf.cwl Branch/Commit ID: b38a8a4785746b8267913ea5389e21ae6dc921a3 |
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collate_unique_SSU_headers.cwl
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: annotator_sub_wf.cwl Branch/Commit ID: b4a02b7ba5733b3cc5b84b79ab0634ff9e4d1aeb |