Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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![]() Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 9e5f228bc1a3d0dfe950b5d41d7e4319e834a6d4 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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![]() Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a |
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basename-fields-test.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl Branch/Commit ID: 9a8e654a91ea5d26e8452dd1cecf3faf22b7a12e |
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bact_get_kmer_reference
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![]() Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: bf7e02ee89d1bb18462cefdbe0db41b09fe75236 |
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kmer_top_n_extract
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![]() Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: bf7e02ee89d1bb18462cefdbe0db41b09fe75236 |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
![]() Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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![]() Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
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umi per-lane alignment subworkflow
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![]() Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a |
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kmer_seq_entry_extract_wnode
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![]() Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 343cb00abda2bc06daf9a32e1386c835f324ae6e |
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count-lines11-wf-noET.cwl
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![]() Path: v1.0/v1.0/count-lines11-wf-noET.cwl Branch/Commit ID: 4d06b9efd26c5813c13684ebcc95547bb75ddfcc |