Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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mirna_profiling.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/mirna_profiling.cwl Branch/Commit ID: 14558b578bad217685ae3c4807ead2a4392d0319 |
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pcawg_minibam_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: pcawg_minibam_wf.cwl Branch/Commit ID: e9f212b6e4c5b8ea691d9112c57201f498cf5dfe |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 708fd971bd3abe4d367e501583b964bc4c0311b9 |
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bgzip and index VCF
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: varscan/bgzip_and_index.cwl Branch/Commit ID: 8c5ae3dbabfe73e0a577b91b25ef5b0b32f388cb |
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mixed_library_metrics.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/mixed_library_metrics.cwl Branch/Commit ID: 14558b578bad217685ae3c4807ead2a4392d0319 |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: ef08cb00bd55b4c712645d171dbc691e01ed6165 Packed ID: qiime2-08-taxonomic-analysis.cwl |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: ef08cb00bd55b4c712645d171dbc691e01ed6165 Packed ID: qiime2-04-features.cwl |
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qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: ef08cb00bd55b4c712645d171dbc691e01ed6165 Packed ID: qiime2-05-phylogeny.cwl |
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wf-alignment.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/wf-alignment.cwl Branch/Commit ID: c4592973b1580e3ff44cb697f64b12345b91e6f5 |
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bgzip and index VCF
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https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/bgzip_and_index.cwl Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31 |