Explore Workflows

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 1b0851e6456ccb1fca237a805ff85c53bc9d58c9

https://doi.org/10.1007/s12275-011-1213-z

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/LSU-from-tablehits.cwl

Branch/Commit ID: 5dc7c5ca618a248a99bd4bf5f3042cdb21947193

https://github.com/common-workflow-language/cwlviewer.git

Path: src/test/resources/cwl/lobstr-v1/lobSTR-workflow.cwl

Branch/Commit ID: 12ecbb131a9c0f710a57e74194171e5814e12e31

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/LSU-from-tablehits.cwl

Branch/Commit ID: 43d2fb8a5430dc56b55e84e3986d0079cad8d185

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/align-texts-wf.cwl

Branch/Commit ID: bfd504ae910fbf7a3492f53430a1c9f3c3c97470

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 00e98923d9ce49790080f88ae46f3d73a19eb65b

Puts a message into a file using echo

https://github.com/common-workflow-language/cwlviewer.git

Path: src/test/resources/cwl/hello/hello.cwl

Branch/Commit ID: 12ecbb131a9c0f710a57e74194171e5814e12e31

Packed ID: main

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/sac-preprocess.cwl

Branch/Commit ID: bfd504ae910fbf7a3492f53430a1c9f3c3c97470

Packed ID: align-texts-wf.cwl