Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph fastq_clean_se.cwl

https://github.com/NCI-GDC/gdc-mirnaseq-cwl.git

Path: workflows/mirnaseq_automation/fastq_clean_se.cwl

Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3
workflow graph 01-qc-se.cwl

RNA-seq 01 QC - reads: SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl

Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854
workflow graph conditional_se_fastq_trimming.cwl

https://github.com/NCI-GDC/gdc-mirnaseq-cwl.git

Path: workflows/mirnaseq_automation/conditional_se_fastq_trimming.cwl

Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3
workflow graph 04-quantification-se-unstranded.cwl

RNA-seq 04 quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl

Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854
workflow graph count-lines7-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines7-wf.cwl

Branch/Commit ID: 9a8e654a91ea5d26e8452dd1cecf3faf22b7a12e
workflow graph kmer_cache_retrieve

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_retrieve.cwl

Branch/Commit ID: 1a6b9e5dea09caa0debbaff30ca39005dfa5e4d4
workflow graph align_merge_sas

https://github.com/ncbi/pgap.git

Path: task_types/tt_align_merge_sas.cwl

Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
workflow graph pindel parallel workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: pindel/workflow.cwl

Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31
workflow graph biowardrobe_chipseq_se.4.cwl

{'extract_fastq': 'http://218.77.58.141:9619','extract_fastq2': 'http://218.77.58.141:9619','extract_fastq3': 'http://121.46.19.86:9619','extract_fastq4': 'http://121.46.19.86:9619', 'fastx_quality_stats': 'http://218.77.58.141:9619','fastx_quality_stats2': 'http://218.77.58.141:9619','fastx_quality_stats3': 'http://121.46.19.86:9619','fastx_quality_stats4': 'http://121.46.19.86:9619','bowtie_aligner': 'http://218.77.58.141:9619','bowtie_aligner2': 'http://218.77.58.141:9619', 'bowtie_aligner3': 'http://121.46.19.86:9619', 'bowtie_aligner4': 'http://121.46.19.86:9619', 'samtools_sort_index': 'http://218.77.58.141:9619','samtools_sort_index2': 'http://218.77.58.141:9619','samtools_sort_index3': 'http://121.46.19.86:9619','samtools_sort_index4': 'http://121.46.19.86:9619', 'samtools_rmdup': 'http://218.77.58.141:9619', 'samtools_rmdup2': 'http://218.77.58.141:9619', 'samtools_rmdup3': 'http://121.46.19.86:9619', 'samtools_rmdup4': 'http://121.46.19.86:9619', 'samtools_sort_index_after_rmdup': 'http://218.77.58.141:9619', 'samtools_sort_index_after_rmdup2': 'http://218.77.58.141:9619', 'samtools_sort_index_after_rmdup3': 'http://121.46.19.86:9619', 'samtools_sort_index_after_rmdup4': 'http://121.46.19.86:9619', 'macs2_callpeak': 'http://218.77.58.141:9619', 'macs2_callpeak2': 'http://218.77.58.141:9619','macs2_callpeak3': 'http://121.46.19.86:9619','macs2_callpeak4': 'http://121.46.19.86:9619', 'get_stat': 'http://218.77.58.141:9619', 'get_stat2': 'http://218.77.58.141:9619', 'get_stat3': 'http://121.46.19.86:9619', 'get_stat4': 'http://121.46.19.86:9619', 'island_intersect': 'http://218.77.58.141:9619', 'island_intersect2': 'http://218.77.58.141:9619', 'island_intersect3': 'http://121.46.19.86:9619', 'island_intersect4': 'http://121.46.19.86:9619', 'average_tag_density': 'http://218.77.58.141:9619', 'average_tag_density2': 'http://218.77.58.141:9619', 'average_tag_density3': 'http://121.46.19.86:9619', 'average_tag_density4': 'http://121.46.19.86:9619' }

 https://github.com/liuzhiyonggd/ga4gh.git

Path: biowardrobe_chipseq_se.4.cwl

Branch/Commit ID: 2dde67eadd96ade931efd7d15a8c094f73a76463
workflow graph fp_filter workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/fp_filter.cwl

Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470