Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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prok-annotation-cheetah.cwl
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https://github.com/mr-c/gales.git
Path: cwl/workflows/prok-annotation-cheetah.cwl Branch/Commit ID: f4faa8acf34fba5e2ef746ab4302cbe6f8f6b083 |
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wf_gen_paleocar_model3.cwl
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https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/gen_paleocar_models/wf_gen_paleocar_model3.cwl Branch/Commit ID: cd1454539fc62c7a9a66de56459610728dec8baa |
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workflow_docker.cwl
[![Docker Repository on Quay](https://quay.io/repository/ratschlab/workflow-experiment/status \"Docker Repository on Quay\")](https://quay.io/repository/ratschlab/workflow-experiment) Very simple and very artifical workflow to experiment with containers and cwl. |
https://github.com/ratschlab/tools-cwl-workflow-experiments.git
Path: cwl/workflow_docker.cwl Branch/Commit ID: dafd2d4f966cb2fb2d9df050432a88f01e962202 |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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emblem_textures.cwl
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https://gitlab.com/unduthegun/stellaris-emblem-lab.git
Path: textures/emblem_textures.cwl Branch/Commit ID: 3a842d7ae8c964c9e972b412c80d779dbcee618a |
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pcawg_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: pcawg_annotate_wf.cwl Branch/Commit ID: 00e98923d9ce49790080f88ae46f3d73a19eb65b |
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checker-workflow-wrapping-tool.cwl
This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/dockstore-testing/md5sum-checker.git
Path: checker-workflow-wrapping-tool.cwl Branch/Commit ID: 2e258215bff1d292b69243ac8761fe6830ea887a |
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word-mapping-dir.cwl#main
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/word-mapping-dir.cwl Branch/Commit ID: bfd504ae910fbf7a3492f53430a1c9f3c3c97470 Packed ID: main |
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tRNA_selection.cwl
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: 00e98923d9ce49790080f88ae46f3d73a19eb65b |