Explore Workflows

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: e9f212b6e4c5b8ea691d9112c57201f498cf5dfe

https://github.com/4dn-dcic/pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-parta-juicer.cwl

Branch/Commit ID: c0c0aba5d8f23c49c2a47317b4b6ac994f00ea59

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 583307878ab83c5845c897f03db920ae8e1929e2

A workflow for running MuSe, MuTect, SomaticSniper, and Pindel. See [the github repository](https://github.com/BD2KGenomics/dockstore_workflow_snps) for details.

https://github.com/BD2KGenomics/dockstore_workflow_snps.git

Path: snp_callers_workflow.cwl

Branch/Commit ID: 8c8217b63d16c13924a00408e2b621d888b0aaa5

https://github.com/NCBI-Hackathons/Virus_Detection_SRA.git

Path: cwl/tools/sidearm.cwl

Branch/Commit ID: 0c62c1f52cd9530d7a51435dab9e23efe2be96c3

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: 5dc7c5ca618a248a99bd4bf5f3042cdb21947193

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 3b602cb35bf68b9a3b2e16fe9ac4c3e2a9d8fdae

network-guided gene prioritization method implementation by KnowEnG that ranks gene measurements by their correlation to observed phenotypes

https://github.com/KnowEnG/cwl-gene-prioritization.git

Path: gp_workflow.cwl

Branch/Commit ID: c490b21749bdd56691f0acf0e5f3a1dddfebfeea

https://github.com/4dn-dcic/pipelines-cwl.git

Path: cwl_awsem_v1/repliseq/repliseq-parta.cwl

Branch/Commit ID: c0c0aba5d8f23c49c2a47317b4b6ac994f00ea59

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 43d2fb8a5430dc56b55e84e3986d0079cad8d185