Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pipeline-bam2vcf-distr.cwl

DNAseq pipeline from bam to vcf in distributed mode

 https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-bam2vcf-distr.cwl

Branch/Commit ID: master
workflow graph wgs_variant_calling_bam.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/wgs_variant_calling_bam.cwl

Branch/Commit ID: dev
workflow graph kfdrc_cram_to_gvcf.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/kfdrc_cram_to_gvcf.cwl

Branch/Commit ID: dev
workflow graph rnaseq_pipeline_fastq_checker.cwl

https://github.com/heliumdatacommons/TOPMed_RNAseq_CWL.git

Path: workflow/checker-workflows/rnaseq_pipeline_fastq_checker.cwl

Branch/Commit ID: master
workflow graph samtools_view_sam2bam

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl

Branch/Commit ID: 1.0.9
workflow graph 02-trim-se.cwl

RNA-seq 02 trimming - reads: SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl

Branch/Commit ID: master
workflow graph revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/revsort.cwl

Branch/Commit ID: main
workflow graph packed.cwl#workflow_sig.cwl

https://github.com/mr-c/cwltests.git

Path: cwl/packed.cwl

Branch/Commit ID: pack_test

Packed ID: workflow_sig.cwl
workflow graph star-cufflinks_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/star-cufflinks/paired_end/star-cufflinks_wf_pe.cwl

Branch/Commit ID: master
workflow graph packed_no_main.cwl#collision

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/packed_no_main.cwl

Branch/Commit ID: main

Packed ID: collision