Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph conditional_markduplicates.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/conditional_markduplicates.cwl

Branch/Commit ID: d5757ab1f3aad3c542950e1dbe8f9d2eec74bede
workflow graph download_check.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/utils/download_check.cwl

Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: 6430df56f7345f837d3f9c3f7fb5af5aa9dadc90
workflow graph exome alignment with qc

https://github.com/genome/cancer-genomics-workflow.git

Path: exome_alignment.cwl

Branch/Commit ID: 6eb7d35ad46207f4ff49e84106b717e17331eb4b
workflow graph download_fastq.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/utils/download_fastq.cwl

Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28
workflow graph upload_results.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/utils/upload_results.cwl

Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28
workflow graph harmonization_bwa_mem_prod.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem_prod.cwl

Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28
workflow graph haplotypecaller.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/haplotypecaller.cwl

Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28
workflow graph alignment_bwa_mem_prod.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem_prod.cwl

Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28
workflow graph Detect DoCM variants

https://github.com/genome/cancer-genomics-workflow.git

Path: docm/germline_workflow.cwl

Branch/Commit ID: d1ee6a2a323cee7e4af00c7e0b926c2192038e1d