Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Add snv and indel bam-readcount files to a vcf
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325 |
|
|
|
bam_readcount workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325 |
|
|
|
exome alignment and germline variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |
|
|
|
Tumor-Only Detect Variants workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0 |
|
|
|
bam2tasuke.cwl
|
https://github.com/nigyta/rice_reseq.git
Path: workflows/bam2tasuke.cwl Branch/Commit ID: 356c47bb87dbcd9a9cb565f147b0dad298dea6cb |
|
|
|
exome alignment with qc
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0 |
|
|
|
Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf_mouse.cwl Branch/Commit ID: 700e73aaed6db1ad538dd27b2e1709f436ad3edb |
|
|
|
Add snv and indel bam-readcount files to a vcf
|
https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 18d8efdc4c97c1c9222f603f529b909b36fa42e7 |
|
|
|
Alignment without BQSR
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl Branch/Commit ID: eb0092603bf57acb7bda08a06e4f2f1e2a8c9b6d |
|
|
|
Alignment without BQSR
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr_nonhuman.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |
