Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Chipseq alignment for nonhuman with qc and creating homer tag directory	https://github.com/apaul7/cancer-genomics-workflow.git Path: definitions/pipelines/chipseq_alignment_nonhuman.cwl Branch/Commit ID: low-vaf
	integrity.cwl	https://github.com/denis-yuen/gdc-dnaseq-cwl.git Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: master
	cnv_exomedepth CNV ExomeDepth calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 1.0.5
	EMG pipeline v3.0 (draft CWL version)	https://github.com/proteinswebteam/ebi-metagenomics-cwl.git Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 3168316
	Exome QC workflow	https://github.com/mnneveau/cancer-genomics-workflow.git Path: qc/workflow_exome.cwl Branch/Commit ID: master
	calibrator_sun.cwl	https://github.com/peijin94/LOFAR-Sun-tools.git Path: utils/IM/LINC/lincSun/workflow/calibrator_sun.cwl Branch/Commit ID: master
	find_hotspots_in_normals.cwl Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups	https://github.com/andurill/ACCESS-Pipeline.git Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master
	extract_single_optional_file.cwl	https://github.com/NCI-GDC/aliquot-maf-cwl.git Path: vcf-to-aliquot-maf/subworkflows/extract_single_optional_file.cwl Branch/Commit ID: main
	indexing_bed	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl Branch/Commit ID: master
	module-3.cwl	https://github.com/mskcc/Innovation-Pipeline.git Path: workflows/module-3.cwl Branch/Commit ID: master

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