Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph CODEX analysis pipeline using Cytokit

https://github.com/hubmapconsortium/codex-pipeline.git

Path: steps/ometiff_second_stitching.cwl

Branch/Commit ID: cf68e50
workflow graph sc_atac_seq_prep_process_init.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/sc_atac_seq_prep_process_init.cwl

Branch/Commit ID: 999afe5
workflow graph ani_top_n

https://github.com/ncbi/pgap.git

Path: task_types/tt_ani_top_n.cwl

Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/ims-mxif-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: master
workflow graph bulk-atac-seq-pipeline.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: bulk-atac-seq-pipeline.cwl

Branch/Commit ID: v1.0
workflow graph download_fastq.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/utils/download_fastq.cwl

Branch/Commit ID: master
workflow graph picard_markduplicates

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: 1.0.5
workflow graph hello_world_checker.cwl

https://github.com/dockstore/hello_world.git

Path: hello_world_checker.cwl

Branch/Commit ID: master
workflow graph 03-map-pe.cwl

ATAC-seq 03 mapping - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl

Branch/Commit ID: v1.0.0
workflow graph pair-workflow-sv.cwl

https://github.com/mskcc/argos-cwl.git

Path: workflows/pair-workflow-sv.cwl

Branch/Commit ID: master