Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
collate_unique_SSU_headers.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: d4e5e53 |
|
|
|
ITS SubWorkflow
|
https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/amplicon/ITS-wf.cwl Branch/Commit ID: master |
|
|
|
hisat2_index.cwl
|
https://github.com/rawgene/cwl.git
Path: workflows/hisat2_index.cwl Branch/Commit ID: master |
|
|
|
varscan somatic workflow
|
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: low-vaf |
|
|
|
RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 930a2cf |
|
|
|
count-lines9-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines9-wf.cwl Branch/Commit ID: main |
|
|
|
chksum_seqval_wf_paired_fq.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_paired_fq.cwl Branch/Commit ID: 0.2.0 |
|
|
|
Illumina read quality control, trimming and contamination filter.
**Workflow for Illumina paired read quality control, trimming and filtering.**<br /> Multiple paired datasets will be merged into single paired dataset.<br /> Summary: - FastQC on raw data files<br /> - fastp for read quality trimming<br /> - BBduk for phiX and (optional) rRNA filtering<br /> - Kraken2 for taxonomic classification of reads (optional)<br /> - BBmap for (contamination) filtering using given references (optional)<br /> - FastQC on filtered (merged) data<br /> **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_illumina_quality.cwl Branch/Commit ID: master |
|
|
|
Hello World
Outputs a message using echo |
https://github.com/puentesdiaz/workflows.git
Path: workflows/hello/hello.cwl Branch/Commit ID: master |
|
|
|
Downsample and HaplotypeCaller
|
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: low-vaf |
