Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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snapanalysis_setup_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snapanalysis_setup_and_analyze.cwl Branch/Commit ID: 44dbe38 |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: d3b8e45 |
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ST520110.cwl
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https://github.com/Marco-Salvi/cwl-ro-crate.git
Path: ST520110.cwl Branch/Commit ID: main |
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wgs alignment with qc
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https://github.com/genome/cancer-genomics-workflow.git
Path: wgs_alignment.cwl Branch/Commit ID: toil_compatibility |
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germline-gpu-v4.2.1.cwl
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https://github.com/NCGM-genome/WGSpipeline.git
Path: Workflows/germline-gpu-v4.2.1.cwl Branch/Commit ID: main |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-single.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 0cd2d70 |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: 135976d |
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wf_trim_and_map_se_nostats.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_trim_and_map_se_nostats.cwl Branch/Commit ID: master |
