Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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revsort-single-no-docker.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/Duke-GCB/calrissian.git
Path: input-data/revsort-single-no-docker.cwl Branch/Commit ID: master |
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03-map-se.cwl
ATAC-seq 03 mapping - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-se.cwl Branch/Commit ID: v1.0.0 |
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map medium and long reads (> 100 bp) against reference genome
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https://github.com/common-workflow-library/bio-cwl-tools.git
Path: bwa/BWA-Mem2-single.cwl Branch/Commit ID: release |
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align_and_count_multiple_report.cwl
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https://github.com/common-workflow-lab/wdl-cwl-translator.git
Path: wdl2cwl/tests/cwl_files/align_and_count_multiple_report.cwl Branch/Commit ID: main |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/david4096/OxoG-Dockstore-Tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: develop |
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wf-variantcall.cwl
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https://github.com/bcbio/test_bcbio_cwl.git
Path: prealign/prealign-workflow/wf-variantcall.cwl Branch/Commit ID: master |
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rest_parallel.cwl
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https://github.com/anandanlk/community_based_fl.git
Path: decentralised_fl/CWL_Workflow/rest_parallel.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3f85843 |
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CNA Pipeline
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https://github.com/ChrisMaherLab/PACT.git
Path: pipelines/cna_pipeline.cwl Branch/Commit ID: master |
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module-4.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/module-4.cwl Branch/Commit ID: master |
