Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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exome alignment with qc
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![]() Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e |
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readme-assembly-workflow.cwl
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![]() Path: flow_create_readme/readme-assembly-workflow.cwl Branch/Commit ID: 0b58c250e8ab7c5efae29443f08ea74316127041 |
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Apply filters to VCF file
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![]() Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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![]() Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a |
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ani_top_n
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![]() Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 33414c888997d558bdcb558ca33c3a728a3e6143 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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![]() Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a |
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wf_get_peaks_scatter_se.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
![]() Path: cwl/wf_get_peaks_scatter_se.cwl Branch/Commit ID: b389f7fe3e76cb6e3f31c3a8e2e3b59bb400e74c |
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workflow.cwl
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![]() Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: 39b1d1a39a2ccdadd52db15b41422ecccc66e605 |
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Chipseq alignment with qc and creating homer tag directory
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![]() Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71 |
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blastp_wnode_naming
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![]() Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49 |