Explore Workflows

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Graph	Name	Retrieved From	View
	exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_nonhuman.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	exome alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_exome.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325
	Motif Finding with HOMER with custom background regions Motif Finding with HOMER with custom background regions --------------------------------------------------- HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein). It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other. It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment. HOMER also tries its best to account for sequenced bias in the dataset. It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem. For more information please refer to: ------------------------------------- [Official documentation](http://homer.ucsd.edu/homer/motif/)	https://github.com/datirium/workflows.git Path: workflows/homer-motif-analysis-bg.cwl Branch/Commit ID: 09267e79fd867aa68a219c69e6db7d8e2e877be2
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71
	bacterial_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a
	readme-genePrediction-workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_create_readme/readme-genePrediction-workflow.cwl Branch/Commit ID: 0b58c250e8ab7c5efae29443f08ea74316127041
	Trim and reformat reads (single and paired end version)	https://github.com/proteinswebteam/ebi-metagenomics-cwl.git Path: workflows/trim_and_reformat_reads.cwl Branch/Commit ID: 7bb76f33bf40b5cd2604001cac46f967a209c47f
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 343cb00abda2bc06daf9a32e1386c835f324ae6e
	wgs alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f