Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph dedup-2-pass-distr.cwl

run 2-pass dedup: algo LocusCollector + algo Dedup sequentially in distributed mode

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/dedup-2-pass-distr.cwl

Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653
workflow graph checker-workflow-wrapping-tool.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: wes-agha-test/checker-workflow-wrapping-tool.cwl

Branch/Commit ID: 120b79b0a64d6e5bec1b00df9fb09d885a2f71a8
workflow graph hc-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/hc-distr.cwl

Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653
workflow graph Chunked version of phmmer-v3.2.cwl

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/phmmer-v3.2-chunked-wf.cwl

Branch/Commit ID: e9d078a5874dd5d545116113f5a830915ddd3e1d
workflow graph cram_to_bam workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: cram_to_bam/workflow.cwl

Branch/Commit ID: 6eb7d35ad46207f4ff49e84106b717e17331eb4b
workflow graph TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: e9d078a5874dd5d545116113f5a830915ddd3e1d
workflow graph bgzip and index VCF

https://github.com/genome/cancer-genomics-workflow.git

Path: varscan/bgzip_and_index.cwl

Branch/Commit ID: 6eb7d35ad46207f4ff49e84106b717e17331eb4b
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 5dc7c5ca618a248a99bd4bf5f3042cdb21947193
workflow graph fp_filter workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: fp_filter/workflow.cwl

Branch/Commit ID: 6eb7d35ad46207f4ff49e84106b717e17331eb4b
workflow graph Varscan Workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: varscan/germline_workflow.cwl

Branch/Commit ID: 6eb7d35ad46207f4ff49e84106b717e17331eb4b