Explore Workflows
View already parsed workflows here or click here to add your own
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final-workflow.cwl
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![]() Path: final-workflow.cwl Branch/Commit ID: 39b1d1a39a2ccdadd52db15b41422ecccc66e605 |
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WGS QC workflow
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![]() Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71 |
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ani_top_n
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![]() Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a |
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qc_duplex
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![]() Path: access_qc__packed.cwl Branch/Commit ID: 248e7c3edaff48e1b97a7931d66aa3b23ce97f54 Packed ID: qc_duplex_bam.cwl |
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genomel_cohort_genotyping.cwl
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![]() Path: genomel/genomel_cohort_genotyping.cwl Branch/Commit ID: c661469505c606e1353f23c21a6654724a9d8d63 |
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download_quality_control.cwl
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![]() Path: workflows/sra/download_quality_control.cwl Branch/Commit ID: e541470bc9d0b064bc4ed7dd2b45d8ec67760613 |
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FastQC - a quality control tool for high throughput sequence data
FastQC - a quality control tool for high throughput sequence data ===================================== FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. The main functions of FastQC are: - Import of data from FastQ files (any variant) - Providing a quick overview to tell you in which areas there may be problems - Summary graphs and tables to quickly assess your data - Export of results to an HTML based permanent report - Offline operation to allow automated generation of reports without running the interactive application |
![]() Path: workflows/fastqc.cwl Branch/Commit ID: 9850a859de1f42d3d252c50e15701928856fe774 |
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kmer_seq_entry_extract_wnode
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![]() Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49 |
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MACE ChIP-exo peak caller workflow for single-end samples
This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE |
![]() Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl Branch/Commit ID: e541470bc9d0b064bc4ed7dd2b45d8ec67760613 |
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Varscan Workflow
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![]() Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f |