Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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metacal-wf.cwl
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https://github.com/EiffL/metacal-pipeline.git
Path: tools/metacal-wf.cwl Branch/Commit ID: f957c91eb041d0fd010cd983e0567a997698979e |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: f993cada89d2c6f7480a0d56baa7836a361b1f3a |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-single.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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metacal-wf.cwl
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https://github.com/EiffL/metacal-pipeline.git
Path: tools/metacal-wf.cwl Branch/Commit ID: b5f3eaf27bfe135dbe009a05f36bf031fd227c81 |
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CRAM_md5sum.cwl
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https://github.com/DataBiosphere/topmed-workflows.git
Path: CRAM-no-header-md5sum/md5sum/CRAM_md5sum.cwl Branch/Commit ID: b140a0bec7d0f875d83cca82744afcbd285eeeda |
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databkgmc.cwl
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https://github.com/lukasheinrich/cwltests.git
Path: cwl/databkgmc.cwl Branch/Commit ID: ef8ad956cb030de00c949afce02e19c02d6d414c |
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CRAM_md5sum_checker_wrapper.cwl
This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/DataBiosphere/topmed-workflows.git
Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl Branch/Commit ID: b140a0bec7d0f875d83cca82744afcbd285eeeda |
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EMG pipeline v3.0 (paired end version)
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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Exome QC workflow
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https://github.com/genome/arvados_trial.git
Path: qc/workflow_exome.cwl Branch/Commit ID: 4cded2c595b2ff83046729cd230f5ad34be3137d |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/demultiplexed-fasta2taxa-summary-plot.cwl Branch/Commit ID: 4304c60b6e2e7980ad1d659f4b904730ce9c0706 |
