Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph prefetch_fastq.cwl

Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd

https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git

Path: bio-cwl-tools/sratoolkit/prefetch_fastq.cwl

Branch/Commit ID: master
workflow graph MoveData-workflow.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: MoveData-workflow.cwl

Branch/Commit ID: master
workflow graph Varscan Workflow

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/varscan_pre_and_post_processing.cwl

Branch/Commit ID: master
workflow graph Atmopsheric Calibration

This workflow performs calibrates atmosphere and produces an atmospheric model and an extinction hypercube.

https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git

Path: workflows/calibpipe/AtmosphericCalibrations/uc-cp-100.cwl

Branch/Commit ID: main
workflow graph umi molecular alignment workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph Dockstore.cwl

https://github.com/kathy-t/ghapps-single-workflow.git

Path: Dockstore.cwl

Branch/Commit ID: annotated-tag-3
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: a8abd0e
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 0746e12
workflow graph chksum_for_a_corrupted_xam_file.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_a_corrupted_xam_file.cwl

Branch/Commit ID: master
workflow graph Apply filters to VCF file

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/filter_vcf_nonhuman.cwl

Branch/Commit ID: low-vaf