Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Runs InterProScan on batches of sequences to retrieve functional annotations.

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/InterProScan-v5-chunked-wf.cwl

Branch/Commit ID: 72bbd5a80688e6a387bfdff5881db2cc3523f7b7
workflow graph analysis.cwl

https://github.com/jsurkont/mirzag.git

Path: tools/analysis.cwl

Branch/Commit ID: b4a38d00a8d6e27540217ac5d590ab8a5da0a92e
workflow graph realign-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/realign-distr.cwl

Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653
workflow graph dedup-2-pass-distr.cwl

run 2-pass dedup: algo LocusCollector + algo Dedup sequentially in distributed mode

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/dedup-2-pass-distr.cwl

Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653
workflow graph checker-workflow-wrapping-tool.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: wes-agha-test/checker-workflow-wrapping-tool.cwl

Branch/Commit ID: 120b79b0a64d6e5bec1b00df9fb09d885a2f71a8
workflow graph hc-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/hc-distr.cwl

Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653
workflow graph Chunked version of phmmer-v3.2.cwl

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/phmmer-v3.2-chunked-wf.cwl

Branch/Commit ID: e9d078a5874dd5d545116113f5a830915ddd3e1d
workflow graph cram_to_bam workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: cram_to_bam/workflow.cwl

Branch/Commit ID: 6eb7d35ad46207f4ff49e84106b717e17331eb4b
workflow graph TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: e9d078a5874dd5d545116113f5a830915ddd3e1d
workflow graph bgzip and index VCF

https://github.com/genome/cancer-genomics-workflow.git

Path: varscan/bgzip_and_index.cwl

Branch/Commit ID: 6eb7d35ad46207f4ff49e84106b717e17331eb4b