Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	CNV_pipeline	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/workflow.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f
	trimmed_fastq Quality Control and Raw Data trimming	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: c3fd9c28e495c9bb7e3a8db53ed564b18d718b2a
	cnv_codex CNV CODEX2 calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/cnv_codex.cwl Branch/Commit ID: c84d205c8239b7dea9d1b49e3e166973c3ebcd66
	cnv_exomedepth CNV ExomeDepth calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f
	Replace legacy AML Trio Assay	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a
	samtools_sort	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/samtools_sort.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 90a321ecf2d049330bcf0657cc4d764d2c3f42dd
	cnv_manta CNV Manta calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/cnv_manta.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f
	final_filtering Final filtering	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/final_filtering.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f
	bwa_mem	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/bwa_mem.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f