Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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scatter-valuefrom-wf4.cwl#main
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![]() Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf4.cwl Branch/Commit ID: a70a83fe14a100cd16e2402ec17b2904f5eeb17d Packed ID: main |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
![]() Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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ug-distr.cwl
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![]() Path: stage/ug-distr.cwl Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653 |
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HS Metrics workflow
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![]() Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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varscan somatic workflow
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![]() Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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kmer_seq_entry_extract_wnode
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![]() Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5 |
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Variant calling workflow for given interval
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![]() Path: WGS-processing/cwl/helper/gatk-wf-with-interval.cwl Branch/Commit ID: d147d1d1fafeeea06bd09d9479337b0f5aab43b0 |
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Per-region pindel
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![]() Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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Apply filters to VCF file
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![]() Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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scatter GATK HaplotypeCaller over intervals
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![]() Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |