Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: test |
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wf_split_self_and_idr.cwl
This workflow returns the reproducible number of split peaks given a single bam file and its size-matched input pair. This workflow splits the bam file first, but does not do anything to the input. |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_split_self_and_idr.cwl Branch/Commit ID: master |
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main-somatic.cwl
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https://github.com/FarahZKhan/bcbio_test_cwlprov.git
Path: somatic/somatic-workflow/main-somatic.cwl Branch/Commit ID: master |
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ACCESS_pipeline.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/ACCESS_pipeline.cwl Branch/Commit ID: master |
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Apply filters to VCF file
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/filter_vcf_mouse.cwl Branch/Commit ID: downsample_and_recall |
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SetParameterFromExternal
Receive parameter update (e.g., by querying an external source like a configuration or calibration database) or by expert input (e.g., by a member of a telescope team or a simulation pipeline expert). |
https://gitlab.desy.de/gernot.maier/cwlsandbox.git
Path: workflows/SetParameterFromExternal.cwl Branch/Commit ID: main |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 930a2cf |
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sequence (bam or fastqs) to trimmed fastqs and HISAT alignments
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: low-vaf |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: 1.0.7 |
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preprocess.cwl
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https://github.com/ncbi-hackathons/epigenomics_cwl.git
Path: cwl/tools/preprocess.cwl Branch/Commit ID: master |
