Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and somatic variant detection
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome_nonhuman.cwl Branch/Commit ID: low-vaf |
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EMG pipeline v4.0 (paired end version)
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-paired.cwl Branch/Commit ID: master |
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Low vaf Detect Variants workflow for Megan Cooper
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/low_vaf_detect_variants.cwl Branch/Commit ID: low-vaf |
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somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: low-vaf |
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Detect Variants workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_nonhuman.cwl Branch/Commit ID: low-vaf |
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Immunotherapy Workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/immuno.cwl Branch/Commit ID: low-vaf |
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kallisto-pe.cwl
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https://github.com/yyoshiaki/cwl_user_guide.git
Path: kallisto/kallisto-pe.cwl Branch/Commit ID: master |
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TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: assembly |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/workflow.cwl Branch/Commit ID: master |
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hi-c-processing-pairs-nonorm.cwl
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https://github.com/4dn-dcic/pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl Branch/Commit ID: dev2 |
