Explore Workflows

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/816_wf.cwl

Branch/Commit ID: main

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master

https://github.com/genome/cancer-genomics-workflow.git

Path: rnaseq/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: toil_compatibility

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: master

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_seed.cwl

Branch/Commit ID: a4aaa261ff16cac6fa2d706eac7593edfff43ee3

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/metrics.cwl

Branch/Commit ID: 1.0

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/yeolab/eclip.git

Path: cwl/wf_trim_and_map_se.cwl

Branch/Commit ID: master

https://github.com/dimitrapanou/scrnaseq-cwl.git

Path: steps.cwl

Branch/Commit ID: b8e641c

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: ca6ca61

Outputs a message using echo

https://gitlab.cs.man.ac.uk/soiland-reyes/test1337.git

Path: hello.cwl

Branch/Commit ID: master