Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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01-qc-se.cwl
ChIP-seq 01 QC - reads: SE |
![]() Path: v1.0/ChIP-seq_pipeline/01-qc-se.cwl Branch/Commit ID: ebd63f705d0fde7290e42c8300d5420c25cfbfe3 |
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count-lines1-wf.cwl
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![]() Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: d7481d03fa4b5b4630392540f598acfb100b421d |
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03-map-pe-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: PE - blacklist removal |
![]() Path: v1.0/ATAC-seq_pipeline/03-map-pe-blacklist-removal.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3 |
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exomeseq-00-prepare-reference-data.cwl
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![]() Path: subworkflows/exomeseq-00-prepare-reference-data.cwl Branch/Commit ID: e82f3a71183048dd6700ec6725ee526ac1a95238 |
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Unaligned BAM to BQSR and VCF
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![]() Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b |
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align_merge_sas
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![]() Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 47ccbd0bc7b45bf8b3c92d0a66c1a9a232367a5d |
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exome alignment and somatic variant detection for cle purpose
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![]() Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416 |
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scatter-wf4.cwl#main
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![]() Path: cwltool/schemas/v1.0/v1.0/scatter-wf4.cwl Branch/Commit ID: 216fbe57afcf67d81c99b49c1aa3aee0844f0a6a Packed ID: main |
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Bisulfite alignment and QC
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![]() Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87 |
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bam to trimmed fastqs and biscuit alignments
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![]() Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87 |