Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
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download_root.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/unix/download_root.cwl Branch/Commit ID: 17823fcd036d134df803fbf76e23b0bc5eabedfd |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533 |
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Unaligned to aligned BAM
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: aba52e94b6d7470132d3c092c26d67e29d615300 |
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integrity.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/integrity.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52 |
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umi duplex alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379 |
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steplevel-resreq.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/steplevel-resreq.cwl Branch/Commit ID: 5ef2516220cd2ed327ba7966e7d812de969f4eea |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379 |
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count-lines1-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines1-wf.cwl Branch/Commit ID: 0db44e3c9805a070564f954222efff71cd791b70 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379 |
