Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: No_filters_detect_variants |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 1.0.9 |
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Detect Variants workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: No_filters_detect_variants |
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combine_counts.cwl
Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file. |
https://github.com/ReddyLab/bird-workflow.git
Path: 02_combine_counts/combine_counts.cwl Branch/Commit ID: main |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 5e82174 |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: master |
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main.cwl
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https://github.com/smc-rna-challenge/Ginny-9609145.git
Path: main.cwl Branch/Commit ID: master |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: de81bd20ce8829ef64146115902a10e4fe7bad0b |
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strelka workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: de81bd20ce8829ef64146115902a10e4fe7bad0b |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: de81bd20ce8829ef64146115902a10e4fe7bad0b |
