Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph germline.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/germline.cwl

Branch/Commit ID: master
workflow graph rhapsody_targeted_1.9-beta.cwl#VDJ_GatherCalls.cwl

VDJ_GatherCalls collect the outputs from the multi-processed VDJ step into one file.

https://github.com/longbow0/cwl.git

Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl

Branch/Commit ID: master

Packed ID: VDJ_GatherCalls.cwl
workflow graph hello_world.cwl

https://github.com/Richard-Hansen/hello_world.git

Path: hello_world.cwl

Branch/Commit ID: v1.0.0
workflow graph bulk_process.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/bulk_process.cwl

Branch/Commit ID: 14985c9
workflow graph Whole genome alignment and somatic variant detection

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_wgs.cwl

Branch/Commit ID: low-vaf
workflow graph RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f
workflow graph SSU-from-tablehits.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 3168316
workflow graph samtools_view_sam2bam

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl

Branch/Commit ID: 1.0.5
workflow graph exome alignment and germline variant detection

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph picard_markduplicates

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: 1.0.9