Explore Workflows

Puts a message into a file using echo

https://github.com/markrobbo/workflows.git

Path: workflows/hello/hello.cwl

Branch/Commit ID: master

Packed ID: main

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines7-wf.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: f993cad

https://github.com/msk-access/uncollapsed_bam_generation.git

Path: uncollapsed_bam_generation.cwl

Branch/Commit ID: master

Whole Exome Sequence preprocessing using GATK4 - v2.2.0

https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: exomeseq-gatk4-preprocessing.cwl

Branch/Commit ID: develop

FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-04-features.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: master

https://github.com/kyusque/hoge.git

Path: log2pieda_s.cwl

Branch/Commit ID: main

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: master

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/bwameth/bwameth_mulitlib.cwl

Branch/Commit ID: main