Explore Workflows

CNV CODEX calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_codex.cwl

Branch/Commit ID: master

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf_nonhuman.cwl

Branch/Commit ID: master

https://doi.org/10.1007/s12275-011-1213-z

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 1b0851e

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/epigenome-chip-seq/epigenome-chip-seq.cwl

Branch/Commit ID: main

This workflow aligns the fastq files using STAR for paired-end samples to be used in circRNA pipeline

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA.cwl

Branch/Commit ID: master

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/unifiedgenotyper.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/811.cwl

Branch/Commit ID: main

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: 0.4.1

Replace named entities in a directory of text files. Can be used as part of an data anonymization workflow.

https://github.com/WhatWorksWhenForWhom/nlppln.git

Path: nlppln/cwl/anonymize.cwl

Branch/Commit ID: master

https://github.com/svonworl/Broad-Best-Practice-Data-pre-processing-CWL1.0-workflow.git

Path: broad-best-practice-data-pre-processing-workflow-4-1-0-0_decomposed.cwl

Branch/Commit ID: master