Explore Workflows
View already parsed workflows here or click here to add your own
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kmer_cache_store
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![]() Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c |
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Run pindel on provided region
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![]() Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97 |
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Replace legacy AML Trio Assay
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![]() Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97 |
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umi per-lane alignment subworkflow
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![]() Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |
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samtoolsW.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
![]() Path: samtoolsW.cwl Branch/Commit ID: 530e671c113e91fe6b9114eda32103bb980450c7 |
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scatter-valuefrom-wf3.cwl#main
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![]() Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf3.cwl Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4 Packed ID: main |
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count-lines10-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4 |
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varscan somatic workflow
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![]() Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 18d8efdc4c97c1c9222f603f529b909b36fa42e7 |
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count-lines4-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4 |
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collate_unique_SSU_headers.cwl
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![]() Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: f993cada89d2c6f7480a0d56baa7836a361b1f3a |