Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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extract_readgroup_fastq_pe_http.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroup_fastq_pe_http.cwl Branch/Commit ID: 017c7572ea309c7d5b34bcc9bc1bdafbe47cb515 |
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extract_readgroups_bam_http.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroups_bam_http.cwl Branch/Commit ID: 017c7572ea309c7d5b34bcc9bc1bdafbe47cb515 |
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wgs_alignment_fq_wf.cwl
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https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/wgs_alignment_fq_wf.cwl Branch/Commit ID: f2a1a903cfdd8d339e022ef65a55e2d71e8d93b1 |
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integrity.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: 017c7572ea309c7d5b34bcc9bc1bdafbe47cb515 |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: ddb49a0951d9ad537269d7db3fe8f904495a8bf4 |
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kfdrc_bwamem_subwf.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: workflows/dev/ultra-opt/kfdrc_bwamem_subwf.cwl Branch/Commit ID: 7a7d6a943b504690341efad2c2ff5fea5d9afd0d |
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xenbase-sra-to-fastq-se.cwl
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https://github.com/datirium/workflows.git
Path: subworkflows/xenbase-sra-to-fastq-se.cwl Branch/Commit ID: db6abb2735f87614b870fca9990d36ea786cbbce |
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hi-c-processing-parta-juicer.cwl
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https://github.com/mr-c/4dn-dcic-pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-parta-juicer.cwl Branch/Commit ID: 91d67820264c8ebac829174cb1d0c7c5e30c613f |
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transform.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/transform.cwl Branch/Commit ID: 017c7572ea309c7d5b34bcc9bc1bdafbe47cb515 |
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rna amplicon analysis for fastq files
RNAs - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/amplicon-fastq.workflow.cwl Branch/Commit ID: 1b1bb901b849b32cbfc4cb58d736bb617d514319 |
