Explore Workflows
View already parsed workflows here or click here to add your own
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First scatter to find seed orthologs, unite them, find annotations
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Path: workflows/subworkflows/assembly/eggnog-subwf.cwl Branch/Commit ID: eosc-life-gos |
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encode_mapping_workflow.cwl
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Path: local-workflows/encode_mapping_workflow.cwl Branch/Commit ID: v1.0 |
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batch-preprocess-ont.cwl
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Path: PreProcessing/batch-preprocess-ont.cwl Branch/Commit ID: master |
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oxog_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
Path: oxog_sub_wf.cwl Branch/Commit ID: develop |
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samtools_sort
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Path: structuralvariants/cwl/subworkflows/samtools_sort.cwl Branch/Commit ID: master |
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tRNA_selection.cwl
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Path: tools/tRNA_selection.cwl Branch/Commit ID: 5dc7c5c |
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: v0.0.3 |
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umi per-lane alignment subworkflow
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Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: master |
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pipeline-fastq2vcf.cwl
DNAseq pipeline from fastq to vcf |
Path: pipeline/pipeline-fastq2vcf.cwl Branch/Commit ID: master |
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Downsample and HaplotypeCaller
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Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: low-vaf |
