Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wf_paleocar_models.cwl

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw2cwl_parser/example_sql/paleocar_models/wf_paleocar_models.cwl

Branch/Commit ID: master
workflow graph if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/toolkit/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl

Branch/Commit ID: 0.4.0
workflow graph wgs alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_wgs.cwl

Branch/Commit ID: master
workflow graph cond-wf-007_nojs.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-007_nojs.cwl

Branch/Commit ID: main
workflow graph chksum_for_a_corrupted_fastq_file.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_a_corrupted_fastq_file.cwl

Branch/Commit ID: 0.5.0
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/amplicon/trim_and_reformat_reads.cwl

Branch/Commit ID: master
workflow graph count-lines9-wf-noET.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines9-wf-noET.cwl

Branch/Commit ID: main
workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/pcawg-minibam.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: 1.0.0
workflow graph dedup-3-pass.cwl

run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/dedup-3-pass.cwl

Branch/Commit ID: master
workflow graph Apply filters to VCF file

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/filter_vcf.cwl

Branch/Commit ID: downsample_and_recall