Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bacterial Annotation, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_2nd_pass.cwl Branch/Commit ID: test |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: master |
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uparseRenameWithMetadata.cwl
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https://github.com/h3abionet/h3abionet16S.git
Path: workflows-cwl/uparseRenameWithMetadata.cwl Branch/Commit ID: master |
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taxcheck.cwl
Perform taxonomic identification tasks on an input genome |
https://github.com/ncbi/pgap.git
Path: taxcheck.cwl Branch/Commit ID: master |
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STAR-RNA-Seq alignment and transcript/gene abundance workflow with Xenosplit
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq_star_fusion_with_xenosplit.cwl Branch/Commit ID: master |
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preprocessor_for_oxog.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/pcawg-oxog-filter.git
Path: preprocessor_for_oxog.cwl Branch/Commit ID: master |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: caea457 |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: 1.0.9 |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: master |
