Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb |
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annotation.cwl
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https://github.com/nigyta/bact_genome.git
Path: cwl/workflow/annotation.cwl Branch/Commit ID: 6472a8e0e9b13eaf21177cc2c2886f0c303e0e16 |
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bam2fasta.cwl
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https://github.com/arvados/bh20-seq-resource.git
Path: workflows/fastq2fasta/bam2fasta.cwl Branch/Commit ID: 4f30e506055acb788a1ff1bbcb6359c4413a4eab |
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assm_assm_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47 |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268 |
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bams2gvcf.woBQSR_male.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_male.cwl Branch/Commit ID: a1c9cd63c80122d6a831059cdb73ec9a9455af6f |
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Transcriptome Read assignment
This workflow download SRA samples and aligng them to a transcriptome fasta file |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Annotation/transcriptome-read-assignment.cwl Branch/Commit ID: 192ed9291ee22c6514ea9ea3dd407eedc3c448c1 |
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cram_to_bam workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: e7e888df9e7d44f036c4c7985e474016ee9e6525 |
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wffail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/wffail.cwl Branch/Commit ID: 78fe9d41ee5a44f8725dfbd7028e4a5ee42949cf |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 953d7866bc70e14c02a6bb8c5a72305caa823bfc |
