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Graph	Name	Retrieved From	View
	spurious_annot pass2	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: 708e141d99f6e5f30d9402d9f890562606a0d97e
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 708e141d99f6e5f30d9402d9f890562606a0d97e
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 708e141d99f6e5f30d9402d9f890562606a0d97e
	module-4	https://github.com/mskcc/roslin-variant.git Path: setup/cwl/module-4.cwl Branch/Commit ID: e96613177b18b76c6fac98b945660bde65ebdd80
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 708e141d99f6e5f30d9402d9f890562606a0d97e
	spurious_annot	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 708e141d99f6e5f30d9402d9f890562606a0d97e
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 708e141d99f6e5f30d9402d9f890562606a0d97e
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 708e141d99f6e5f30d9402d9f890562606a0d97e
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 708e141d99f6e5f30d9402d9f890562606a0d97e
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 708e141d99f6e5f30d9402d9f890562606a0d97e