Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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cram_to_bam workflow
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![]() Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |
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umi duplex alignment fastq workflow
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![]() Path: definitions/pipelines/alignment_umi_duplex.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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exome alignment and variant detection
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![]() Path: exome_workflow.cwl Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31 |
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Apply filters to VCF file
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![]() Path: definitions/subworkflows/filter_vcf_mouse.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |
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Chipseq alignment for mouse with qc and creating homer tag directory
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![]() Path: definitions/pipelines/chipseq_alignment_mouse.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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exome alignment and somatic variant detection for cle purpose
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![]() Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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bam to trimmed fastqs and biscuit alignments
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![]() Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |
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gathered exome alignment and somatic variant detection
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![]() Path: definitions/pipelines/somatic_exome_gathered.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |
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Scattered variant calling workflow
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![]() Path: WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl Branch/Commit ID: 35d7db9545d96c6f154aabf6c78a66e4dcede3b6 |
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Unaligned BAM to BQSR and VCF
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![]() Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |