Explore Workflows

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/pilot-run/worklflows/kfdrc_alignment_pipeline.cwl

Branch/Commit ID: 7a7d6a943b504690341efad2c2ff5fea5d9afd0d

run 2-pass dedup: algo LocusCollector + algo Dedup sequentially in distributed mode

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/dedup-2-pass-distr.cwl

Branch/Commit ID: d20382adfe7285cb517a25d95d2bcb7586546e23

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/bwa_se.cwl

Branch/Commit ID: d6c0acb0a5e8546dc96463c9d184ca96548e22b3

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/gatk4_cohort_genotyping.cwl

Branch/Commit ID: 286bce04c474d28bddeb7dbe43ab8d59919fe855

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_amplicon_kit.cwl

Branch/Commit ID: d6c0acb0a5e8546dc96463c9d184ca96548e22b3

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_exome.cwl

Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945

https://github.com/llevar/butler.git

Path: examples/workflows/metagenomics-ena-workflow/cwl-workflow/metagenomics_workflow_ena.cwl

Branch/Commit ID: 27598209d944d23bbf9663181be7c6cdafbc0699

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/transform.cwl

Branch/Commit ID: 017c7572ea309c7d5b34bcc9bc1bdafbe47cb515

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: f6f323d64d9619f2624b3cbe81968883de4cffeb

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/exome_alignment.cwl

Branch/Commit ID: db0a91eb094d0a7c58042d4264986ea042dd4827