Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
EMG assembly for paired end Illumina
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 5e82174 |
|
|
|
qiime2 DADA2 detect/correct paired sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-03-dada2-paired.cwl |
|
|
|
wf.cwl#QualityFilterOuter.cwl
|
https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git
Path: wf.cwl Branch/Commit ID: main Packed ID: QualityFilterOuter.cwl |
|
|
|
Seed Protein Alignments
|
https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_seqids.cwl Branch/Commit ID: dev |
|
|
|
Apply filters to VCF file
|
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: low-vaf |
|
|
|
presto.cwl
|
https://github.com/EOSC-LOFAR/presto-cwl.git
Path: presto.cwl Branch/Commit ID: visualise |
|
|
|
exome alignment and germline variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: master |
|
|
|
chksum_seqval_wf_interleaved_fq.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.5.0 |
|
|
|
Exome QC workflow
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: downsample_and_recall |
|
|
|
functional analysis prediction with InterProScan
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: d3b8e45 |
