Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment with qc, no bqsr, no verify_bam_id
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome_mouse.cwl Branch/Commit ID: eb0092603bf57acb7bda08a06e4f2f1e2a8c9b6d |
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umi duplex alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
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Unaligned BAM to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
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count-lines11-null-step-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines11-null-step-wf.cwl Branch/Commit ID: f24c797ea017a467185b516ea4862c9c494c9d33 |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 41dfc42a730087189122a2f74b2f547a4665a225 |
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strelka workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
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STAR-RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq_star_fusion.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |
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kmer_ref_compare_wnode
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: 41dfc42a730087189122a2f74b2f547a4665a225 |
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count-lines9-wf-noET.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines9-wf-noET.cwl Branch/Commit ID: f24c797ea017a467185b516ea4862c9c494c9d33 |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
