Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Replace legacy AML Trio Assay
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![]() Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4 |
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Tumor-Only Detect Variants workflow
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![]() Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 193b8de694f262ad55c7635a603c20c124748583 |
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CODEX analysis pipeline using Cytokit
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![]() Path: pipeline.cwl Branch/Commit ID: 2d9ddc61af332c2be63e4a519d9769813f3cc57d |
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exome alignment and germline variant detection
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![]() Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0 |
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Example of setting up a simulation system
CWL version of the md_list.cwl workflow for HPC. |
![]() Path: md_list.cwl Branch/Commit ID: 95111f381617c8e63794eca42d06f10ed2605f4f |
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WGS processing workflow scattered over samples
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![]() Path: WGS-processing/cwl/wgs-processing-wf.cwl Branch/Commit ID: 7521f8770b81d944aad3c1e0fd7ef5a886600190 |
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exome alignment and germline variant detection
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![]() Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4 |
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wgs alignment and tumor-only variant detection
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![]() Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0 |
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PerformanceSummaryGenome_v0_1_0.cwl
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![]() Path: janis_pipelines/wgs_somatic/cwl/tools/PerformanceSummaryGenome_v0_1_0.cwl Branch/Commit ID: 1d45492ae0085824a7ac532d0dfa6621c1cbe415 |
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exome alignment and somatic variant detection
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![]() Path: definitions/pipelines/somatic_exome_mouse.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4 |